GAS5
Species: Homo sapiens
Position: chr1: 173863898-173868882
Known as: GAS5 , ENSG00000234741
Transcript: NR_152521 , NR_152527 , NR_152529 , NR_152534 , NR_152522 , NR_152523 , NR_152530 , NR_152526 , NR_152528 , NR_152524 , NR_152533 , NR_002578 , NR_152525 , NR_152531 , NR_152532 , ENST00000451607 , ENST00000432536 , ENST00000430245 , ENST00000454068 , ENST00000450589 , ENST00000448718 , ENST00000449289 , ENST00000452197 , ENST00000414075 , ENST00000425771
Sequence: Download
Description:
GAS5 is necessary and sufficient for growth arrest in human peripheral blood T-cells, and could functions by controlling apoptosis and the cell cycle in lymphocytes. In some cell lines, certain Gas5 isoforms act to sensitise the cells to apoptosis but can't induce apoptosis on their own. In other cells types Gas5 can both induce apoptosis and growth arrest and sensitise the cells to further apoptosis. Gas5 can be regulated by mTOR, with mTOR (which promotes cellular proliferation) acting to inhibit the function of Gas5. Gas5 carries out its function by binding the DNA binding domain of the glucocorticoid receptor (GR) with a sequence that mimmics the glucocorticoid response element (GRE). Gas5 is translocated into the nucleus bound to the GR where it prevents GR from binding GREs and regulating transcription of target genes including apoptosis inhibitors.
sgRNAs
sgRNA_ID | Sequence | Position (Chr) | Position (Lnc) | Length | PAM | Type | Validity | Cell line | Note | Ref. |
---|---|---|---|---|---|---|---|---|---|---|
sgRNA1 | GCGCTCCAGCCTTTGTCTGCTA | 173867902-173867923(-) | gene body (near 5') | 22 | AGG | CRISPRi | Experimental validated | K562 | NA | [1] |
sgRNA2 | GTTTTATCTTTGCGAATGTTG | 173867935-173867955(-) | gene body (near 5') | 21 | CGG | CRISPRi | Experimental validated | K562 | NA | [1] |
sgRNA3 | GGTGACCTTAGCAGACAAAGGC | 173867894-173867915(+) | gene body (near 5') | 22 | TGG | CRISPRi | Experimental validated | K562 | NA | [1] |
GBrowser
Links
Reference
1. Gilbert LA, Horlbeck MA, Adamson B, Villalta JE, Chen Y, et al. (2014). Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation. Cell 159(3): 647-61.