LncRNA Gene

ZFLNCG01701

Basic Information

Chromesome: chr3

Start: 23977439

End: 23979528

Transcript: ZFLNCT02496

Known as: ENSDARG00000097849

Genome Browser
Express profile Download
Express in top 10 samples
Sample Tissue Condition FPKM
SRR658533 bud normal 9.35
SRR658541 6 somite normal 8.76
SRR658545 6 somite Gata6 morphant 7.71
SRR658539 bud Gata5/6 morphant 7.62
SRR658535 bud Gata5 morphant 7.61
SRR658547 6 somite Gata5/6 morphant 7.27
SRR797914 embryo pbx2/4-MO 6.82
SRR797917 embryo pbx2/4-MO and prdm1-/- 6.57
SRR658537 bud Gata6 morphant 6.15
SRR797908 embryo normal 6.02
Express in tissues
Correlated coding gene Download
gene correlation coefficent
hoxc6b 0.74
hoxb1a 0.72
hoxb9a 0.72
hoxb1b 0.72
hoxb10a 0.71
hoxc8a 0.70
hoxb7a 0.70
meox1 0.70
hoxa9b 0.69
hoxa9a 0.68
Gene Ontology Download
GO P value
GO:0007275 6.40e-11
GO:0034645 6.95e-11
GO:0044271 8.14e-11
GO:0019438 8.73e-11
GO:0006355 8.99e-11
GO:1903506 9.17e-11
GO:2001141 9.55e-11
GO:0090304 1.07e-10
GO:0009059 1.22e-10
GO:0018130 1.23e-10
GO:0043227 1.52e-10
GO:0005634 1.54e-10
GO:0043226 1.74e-10
GO:0043229 2.05e-10
GO:0043231 2.09e-10
GO:0044424 9.58e-09
GO:0044425 1.69e-06
GO:0044464 3.68e-06
GO:0016020 3.96e-06
GO:0031224 6.92e-06
GO:0001071 5.41e-11
GO:0003700 5.41e-11
GO:0043565 6.72e-11
GO:0003677 1.26e-10
GO:0003676 1.58e-10
GO:1901363 1.87e-10
GO:0097159 2.13e-10
GO:0005488 1.36e-07
GO:0016705 5.60e-06
GO:0008395 8.75e-06
KEGG Pathway Download
KO P value
ko04950 5.34e-08
ko05205 1.93e-05
ko04340 1.24e-04
ko00260 3.15e-04
ko05217 3.39e-04
ko04975 5.41e-04
ko03008 8.47e-04
ko04612 3.83e-03
ko05202 1.12e-02
ko04144 1.49e-02
Conservation
Zebrafish lncRNA Transcript Human lncRNA Transcript Mouse lncRNA Transcript Methods
ZFLNCT02496 NONMMUT011701; Direct blastn
ZFLNCT02496 ENST00000513533; ENST00000481995; ENST00000548801; ENST00000518046; ENST00000518088; ENST00000613383; ENST00000523364; ENST00000429755; ENST00000467897; ENST00000508688; ENST00000613939; ENST00000512427; ENST00000620092; ENST00000616712; ENST00000617934; ENST00000425358; ENST00000521197; ENST00000615604; ENST00000521231; ENST00000464382; ENST00000602610; ENST00000523790; ENST00000518848; ENST00000622675; ENST00000619974; ENST00000434063; ENST00000479766; ENST00000465846; ENST00000466037; ENST00000517635; ENST00000524304; ENST00000492897; ENST00000520395; ENST00000460041; ENST00000426965; ENST00000523331; ENST00000480872; ENST00000505700; ENST00000593300; ENST00000521159; ENST00000520360; ENST00000440016; ENST00000619311; ENST00000519935; ENST00000477144; ENST00000518947; ENST00000428939; ENST00000435312; ENST00000512206; ENST00000521687; ENST00000524048; ENST00000474040; ENST00000517641; ENST00000502764; ENST00000491264; ENST00000429611; ENST00000474324; ENST00000562848; ENST00000498652; ENST00000604081; ENST00000467155; ENST00000519694; ENST00000517550; ENST00000476204; ENST00000593438; ENST00000522863; ENST00000495032; ENST00000494420; ENST00000522193; ENST00000487849; ENST00000504972; ENST00000620211; ENST00000522674; ENST00000620901; rna51652; rna110526; rna110525; rna110524; rna51647; rna110493; rna51650; rna84770; rna110528; rna51632; rna110538; rna51645; rna20444; rna84771; rna51633; rna110530; rna110537; rna51654; rna110529; NONHSAT054421; NONHSAT075627; NONHSAT211837; NONHSAT028528; NONHSAT119677; NONHSAT119697; NONHSAT183137; NONHSAT119670; NONHSAT175307; NONHSAT119672; NONHSAT119682; NONHSAT054434; NONHSAT119698; NONHSAT028529; NONHSAT175305; NONHSAT119702; NONHSAT119704; NONHSAT054411; NONHSAT119680; NONHSAT119706; NONHSAT054437; NONHSAT054405; NONHSAT211840; NONHSAT119687; NONHSAT119664; NONHSAT211839; NONHSAT211844; NONHSAT054435; NONHSAT054444; NONHSAT028530; NONHSAT054450; NONHSAT054401; NONHSAT119711; NONHSAT119684; NONHSAT119665; NONHSAT211838; NONHSAT185938; NONHSAT119675; NONHSAT054441; NONHSAT185937; NONHSAT119678; NONHSAT054449; NONHSAT119667; NONHSAT175306; NONHSAT119669; NONHSAT119673; NONHSAT054406; NONHSAT054433; NONHSAT211835; NONHSAT054403; NONHSAT211834; NONHSAT213318; NONHSAT175303; NONHSAT119693; NONHSAT119683; NONHSAT119703; NONHSAT054442; NONHSAT075630; NONHSAT054443; NONHSAT119705; NONHSAT054446; NONHSAT028539; NONHSAT028527; NONHSAT119688; NONHSAT119700; NONHSAT119710; NONHSAT175308; NONHSAT211842; NONHSAT119708; NONHSAT211843; NONHSAT211836; NONHSAT028531; NONHSAT163581; NONHSAT054427; NONHSAT054408; NONHSAT054431; NONHSAT163582; NONHSAT119709; NONHSAT175304; NONHSAT119674; NONHSAT028541; NONHSAT119696; NONHSAT054407; NONHSAT213319; NONHSAT054454; NONHSAT119685; NONHSAT119690; NONHSAT119668; NONHSAT119676; NONHSAT054432; NONHSAT211841; NONHSAT119666; NONHSAT119707; ENSMUST00000183562; ENSMUST00000150698; ENSMUST00000185194; ENSMUST00000191326; ENSMUST00000136302; ENSMUST00000134512; ENSMUST00000185090; ENSMUST00000126966; ENSMUST00000184301; ENSMUST00000137729; ENSMUST00000131502; ENSMUST00000184566; ENSMUST00000190845; ENSMUST00000191453; ENSMUST00000145799; ENSMUST00000132326; ENSMUST00000152027; ENSMUST00000184104; ENSMUST00000200824; ENSMUST00000100000; ENSMUST00000156515; ENSMUST00000140952; ENSMUST00000156342; ENSMUST00000147174; ENSMUST00000139005; ENSMUST00000141850; ENSMUST00000184302; ENSMUST00000154027; rna35395; rna35407; rna35414; rna10234; rna35403; rna10228; NONMMUT085706; NONMMUT037975; NONMMUT056965; NONMMUT037980; NONMMUT056968; NONMMUT037983; NONMMUT056957; NONMMUT056950; NONMMUT056969; NONMMUT085709; NONMMUT037973; NONMMUT037974; NONMMUT122276; NONMMUT037979; NONMMUT037976; NONMMUT056966; NONMMUT056970; NONMMUT011703; NONMMUT056953; NONMMUT056971; NONMMUT037977; NONMMUT056955; NONMMUT085710; NONMMUT085707; NONMMUT122275; NONMMUT011705; NONMMUT107327; NONMMUT037978; NONMMUT056952; NONMMUT011706; NONMMUT056954; NONMMUT056959; NONMMUT109225; NONMMUT085708; NONMMUT109226; NONMMUT037982; NONMMUT011701; NONMMUT056960; NONMMUT056967; NONMMUT056961; Collinearity with conserved coding gene
OMIM

OMIM of this lncRNA gene hava does not exist!

Sequence Download
>ZFLNCG01701
TTGTTCAGAAAATGCTTTATTAACAAAATAAACACAATAGATTATTGAATTGCTCTGACAAAGCACAAAT
AAAAAGTAACTAAAATATTCATATAAATTGTATTAATAATTTCGTATAAGAATCACTATTTACAAAGATA
TGATATTTGTGTAATTGAAAAAAAAACTATATTCAAGAAAGTATTCACAACACAATGTCTAAAACGTTTA
CATGCAGTTTACTAAAGCCAAGTGCTAATCACGCTTTACACAAAGCAACATCATCATCAACACCAACAAT
AACAACAACTCTTTATCCTTTTAAAAAGATGCACGAGAAAGAACAAAATGCGGCTACCTCGTTAAAGATC
AACCCGTAATATAAACATTAACACTGTACATAGTCAACAATGCTTAAACGGAATTTGTTACATTGAGACA
AAGGTGAAGATTTTGGGTGAGATATTGCTTTCAACCGCTCTGCAGTAATTTATTACAGAAGCAAATGAAG
CTGTAAAAAACATGCAGCACGTGTTTCTATATTTAAAAAGTAAAAAAGTAAACAGGCTTTAGTTCGATGT
GAGCGTTTTTGTTTTGCATGTTTACTTAGATATATATTGGCATGATTTTTAAATACGAATCTAGTTTCAT
TACAACAATTGGACATCTGCAATTTTACCCTCACCAGAACGCACCACGCACAATGTTTAAGCTGTTATAG
AAATGTAGCATCGTTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTAT
TTATTTATTTATTTATTTATGTTTATATGTTTATTAACTTTGCTATCTTTTGCCATTGGAAAATTGTATT
GACGTTTTATTTCACTAATCGGATCTTCTCGGATCTAGTGTTAGATCTACTCGTGCTAAGCATTATAGCG
CACTGAACTGAAAACAAAACAAAAATGACAATTAAAGAACTTACAGTCCTTGCATGGATAAAATTTGAAG
TGAAGCATTTACAGCATTGGTCGTGGAACCTCATAAAAGCCTAACAGCTTTTTGATGCACTACGTCAACA
ACAAACAGTAGGGGCGTTTATTGCATTTTATAGTTTGTTAAACCATTTACAACCACATTTACCATTACAC
CTGACGCTCAGGTCCATTTCAACATCCCCCTCTTTCTGTAAATACATTAATAGAATATTGTTGTCAAAGA
ATTGAATACGACTCGGCCTACCTCGCTTATTTTTGACGCGCGGGCCACAGTCAGTTCGCTTATTCCTGTA
AAATTGAACGTGCTTATGAGCATTGGATGTGTTTAATCTGATACCAATTAAATCGTGTACTTTTTAAAAT
TGGCCGTCTAGACCCTGACATTTAAAAAAGAAGGCTCGACTTCATTAGAGATTAGGAAATTAAGGACTAA
ATATGCATCACTTTGGGTTGTCTATGCAAAAAAAAAAAAAAAAAAAAAAATCAATCTTTCAAAAGGGTTT
GGAGTAGAGAAGTTGAGGTTGGGGGAGGGGCGGAGGCTATGCACTTGATCTGATGCAAAGCGGCAGATTT
CTCATTAACTTACCCGCTTGAACATATTAATGTGCATATTCTCCCCTCCTCTCTCCCCTGGCCCCCCTTC
TCTCTCCTGCTCCCTCGCGCTCGCTCCCTCTTAGCTCTCTCTCACCCGCTTTCTCTTTTTCTCTCTTTTT
CATTCTCTCACTCCCTTCATATCAGAATCGCGCAGAGCGGTGTCCGTGTGGGGATGCGAGAAACCATAGT
GGAACGAGGATCAGACAGAAGATGCAAATGATCATCAAAACACACCGCAAAATATGAAACTACTCATTTG
CAGCCGAGTAAATCATAGAAAACTGATCGGGAACTGGCACCATTCGCCGGAATTGTGATGCTGGAACTTT
ACAGTGGGAACATGCCAATGGAAGCTTTAGATAAGTTGTTTTAACAAAAGGTATACACACGCAAGCCGCC
CAGTAATTGGAAATCAACGCTTTGCTGCAACATTGTTACCTCAGTAACTGTGAGCTACTGCGCTTATATA
AAGACATTCTATCGTAATCTCTTGAACAAAATCAGTACCACCACCAACAGCAGTAAAAG