sample tissue condition fpkm SRR1205160 5dpf transgenic sqET20 and GFP+ 132.189 SRR1299129 caudal fin Seven days time after treatment 127.641 SRR1299125 caudal fin Half day time after treatment 111.007 SRR1299126 caudal fin One day time after treatment 105.23700000000001 SRR1205157 5dpf transgenic sqET20 and neomycin treated 1h and GFP+ 100.955 SRR1299127 caudal fin Two days time after treatment 97.2335 SRR1205169 5dpf transgenic sqET20 and neomycin treated 5h and GFP+ 96.3719 SRR1299124 caudal fin Zero day time after treatment 89.6186 SRR1205163 5dpf transgenic sqET20 and neomycin treated 3h and GFP+ 81.9595 SRR516123 skin male and 3.5 year 75.8508 SRR1299128 caudal fin Three days time after treatment 75.1699 SRR516121 skin male and 3.5 year 63.5744 SRR941753 posterior pectoral fin normal 58.7837 SRR516125 skin male and 3.5 year 55.9248 SRR941749 anterior pectoral fin normal 53.5532 SRR516122 skin male and 3.5 year 53.1545 SRR516133 skin male and 5 month 46.1334 SRR527836 24hpf normal 40.8029 SRR516129 skin male and 5 month 39.8269 SRR516131 skin male and 5 month 39.3565 SRR1708344 embryo MUTPS 37.033 ERR023145 heart normal 36.1796 SRR1708346 embryo SIBPS 35.8249 SRR516124 skin male and 3.5 year 33.789 SRR516132 skin male and 5 month 32.3785 ERR023143 swim bladder normal 32.2657 SRR527840 24hpf normal 31.296999999999997 SRR516134 skin male and 5 month 30.3663 SRR516128 skin male and 5 month 29.3066 ERR023146 head kidney normal 27.7085 SRR516127 skin male and 5 month 27.5714 SRR516126 skin male and 5 month 26.5265 SRR1534350 larvae 5 ug/l BDE47 treatment 25.7276 SRR1104059 heart kctd10 mut 25.6333 SRR1104058 heart normal 24.8517 SRR1188156 embryo Control PBS 4 hpi 23.8797 SRR1534351 larvae 500 ug/l BDE47 treatment 23.811 SRR1534349 larvae DMSO vehicle 23.5394 SRR1028002 head normal 22.8721 SRR891512 blood normal 22.8607 SRR1167763 embryo ptpn6 morpholino and bacterial infection 22.5539 SRR1647680 head kidney SVCV treatment 22.3793 SRR1004789 larvae impdh2 morpholino 21.6694 SRR535978 larvae normal 21.449 SRR527844 24hpf normal 21.0388 SRR1004788 larvae impdh1b morpholino 21.0038 SRR1708343 embryo MUTAS 21.0038 SRR535986 larvae nhsl1b mut 20.9538 SRR1562528 eye normal 20.2403 SRR372798 28 hpf normal 19.8981 SRR749515 24 hpf eif3ha morphant 19.8392 SRR776510 embryo Salmonella infected and miR-146 knockdown 19.5572 SRR1647681 head kidney SVCV treatment 19.2671 SRR957181 heart normal 19.1368 SRR516130 skin male and 5 month 19.0421 SRR1291417 5 dpi injected marinum 18.762 SRR610741 3 dpf express Ras 18.0951 SRR1004786 larvae control morpholino 18.0164 SRR1004787 larvae impdh1a morpholino 17.7675 SRR372800 2 dpf normal 17.6651 SRR516135 skin male and 5 month 17.6303 SRR372793 shield normal 17.3404 SRR1188148 embryo Control PBS 0.5 hpi 17.0922 SRR527834 head normal 16.936 SRR1028003 head normal 16.4151 SRR1028004 head normal 16.187 SRR610740 3 dpf normal 16.081 SRR776509 embryo Salmonella infected 15.9295 SRR658533 bud normal 15.8475 SRR1523211 embryo control morpholino 15.4228 SRR1167752 embryo normal 15.1122 SRR957180 heart 7 days after heart tip amputation 15.0087 SRR1188160 embryo Insulin 4 hpi 14.9533 SRR776508 embryo miR-146 knockdown 14.82 SRR1708345 embryo SIBAS 14.6395 SRR1167756 embryo mpeg1 morpholino 14.4438 SRR535890 larvae normal 14.2685 SRR942767 embryo myd88-/- and infection with Mycobacterium marinum 14.2318 SRR1188152 embryo Insulin 0.5 hpi 14.2313 SRR1523214 embryo glut12 morpholino 14.1606 SRR1049946 embryo transgenic TgOMP-Gal4 and UAS-GCaMP1.6 and treated with DMSO 14.1479 SRR1291414 5 dpi normal 14.0682 SRR700537 heart Gata4 morpholino 14.0319 SRR535913 larvae krox mut 13.9798 SRR749514 24 hpf normal 13.7649 SRR1035981 13 hpf rx3+/+ or rx3+/- 13.6173 SRR594771 endothelium normal 13.5651 SRR1167757 embryo mpeg1 morpholino and bacterial infection 13.2892 SRR1647679 head kidney normal 13.2436 SRR658545 6 somite Gata6 morphant 13.2051 SRR372796 bud normal 13.1554 SRR535943 larvae vangl mut 12.8602 SRR630464 5 dpf injected epidermidis 12.7037 SRR658537 bud Gata6 morphant 12.6314 SRR372802 5 dpf normal 12.2897 SRR630463 5 dpf normal 12.2659 SRR658535 bud Gata5 morphant 12.2241 SRR942772 embryo myd88+/+ and infection with Mycobacterium marinum 11.6396 SRR1049952 embryo transgenic TgOMP-Gal4 and UAS-GCaMP1.6 and treated with gallein 11.6205 SRR1342218 embryo marco morpholino 11.5183 SRR1004785 larvae normal 11.5165 SRR527833 5 dpf normal 11.2699 SRR776507 embryo normal 11.172 SRR658539 bud Gata5/6 morphant 11.1558 SRR1035978 13 hpf rx3-/- 11.0721 SRR535926 larvae normal 10.9898 SRR1035984 13 hpf normal 10.8655 SRR1167753 embryo bacterial infection 10.7662 SRR658541 6 somite normal 10.5928 SRR658547 6 somite Gata5/6 morphant 10.4574 SRR038627 embryo control morpholino 10.1726 SRR1342219 embryo marco morpholino and infection with Mycobacterium marinum 10.0606 SRR038626 embryo control morpholino and bacterial infection 10.0308 SRR610742 3 dpf express NICD 9.73017 SRR065197 3 dpf U1C knockout 9.53675 SRR527832 16-36 hpf normal 9.098230000000001 SRR038624 embryo traf6 morpholino and bacterial infection 8.77764 SRR1167762 embryo ptpn6 morpholino 8.76858 SRR633550 larvae exposed to hypoxia stress 8.758289999999999 SRR535847 larvae normal 8.748619999999999 SRR831692 embryo normal 8.50629 SRR1562531 muscle normal 8.48063 SRR1342216 embryo norml 8.44016 SRR535849 larvae normal 8.39863 SRR1005530 embryo RPL11 morpholino 8.3814 SRR801556 embryo RPS19 and p53 morpholino 8.34136 SRR700534 heart control morpholino 8.337589999999999 SRR797914 embryo pbx2/4-MO 8.2941 SRR942764 embryo myd88-/- 8.27698 SRR038625 embryo traf6 morpholino 8.24023 SRR658543 6 somite Gata5 morphan 8.23018 SRR797917 embryo pbx2/4-MO and prdm1-/- 8.17698 SRR535852 larvae hoxb1b mut 8.09313 SRR797908 embryo normal 7.94021 SRR633516 larvae normal 7.77756 SRR797911 embryo prdm1-/- 7.697960000000001 SRR1005529 embryo control morpholino 7.564039999999999 SRR801554 embryo control morpholino 7.55267 SRR801555 embryo RPS19 morpholino 7.533739999999999 SRR891495 heart normal 7.47198 SRR1562529 intestine and pancreas normal 7.35695 SRR519717 2 dpf FETOH treatment 7.154610000000001 SRR535850 larvae hoxb1b mut 7.14186 SRR1205151 5dpf transgenic sqET20 and neomycin treated 1h 7.102589999999999 SRR1039571 gastrointestinal diet 0.1 NPM 6.87217 SRR800046 sphere stage 5azaCyD treatment 6.8602300000000005 SRR535848 larvae hoxb1b mut 6.6109800000000005 SRR1039573 gastrointestinal diet 0.75 NPM 6.5463 SRR065196 3 dpf normal 6.53125 SRR1205154 5dpf transgenic sqET20 6.50241 SRR942769 embryo myd88+/+ 6.49832 SRR519737 2 dpf VD3 treatment 6.3794 SRR535851 larvae normal 6.20895 SRR726540 5 dpf normal 6.08796 SRR1342217 embryo infection with Mycobacterium marinum 6.06712 SRR519722 4 dpf FETOH treatment 6.00675 SRR594769 blood normal 5.944459999999999 SRR519742 4 dpf VD3 treatment 5.90091 SRR726541 5 dpf infection with Mycobacterium marinum 5.70045 SRR1648854 brain normal 5.60462 SRR1205166 5dpf transgenic sqET20 and neomycin treated 3h 5.5596 SRR726542 5 dpf infection with control 5.29025 SRR519727 6 dpf FETOH treatment 5.2149 SRR519747 6 dpf VD3 treatment 5.13238 SRR519732 7 dpf FETOH treatment 5.11686 SRR1205172 5dpf transgenic sqET20 and neomycin treated 5h 5.11602 SRR1647684 spleen SVCV treatment 4.8605 SRR514028 retina control morpholino 4.57154 SRR519752 7 dpf VD3 treatment 4.56532 SRR1035237 liver transgenic UHRF1 4.4033 SRR1562533 testis normal 4.2347 SRR1648856 brain normal 4.05026 SRR1569491 embryo normal 3.93258 SRR633544 larvae exposed to cold stress 3.84476 SRR592701 pineal gland normal 3.82973 ERR023144 brain normal 3.6109 SRR891510 muscle normal 3.2771800000000004 ERR145635 skeletal muscle 27 degree_C to 16 degree_C 3.2114 SRR1569495 embryo normal 3.08352 ERR145648 skeletal muscle 27 degree_C to 27 degree_C 2.98636 SRR1562532 spleen normal 2.76978 SRR748491 germ ring normal 2.72112 SRR592703 pineal gland normal 2.47708 ERR145631 skeletal muscle 32 degree_C to 16 degree_C 2.47534 SRR1565811 brain normal 2.28176 ERR145646 skeletal muscle 32 degree_C to 27 degree_C 2.2812900000000003 SRR592702 pineal gland normal 2.12095 SRR527835 tail normal 2.09068 SRR1035239 liver transgenic mCherry control 1.87668 SRR1565813 brain normal 1.8198400000000001 SRR1565817 brain normal 1.70502 SRR1565815 brain normal 1.6958099999999998 SRR1565809 brain normal 1.60874 SRR1648855 brain normal 1.53583 SRR592699 pineal gland normal 1.5078 SRR1647683 spleen SVCV treatment 1.5004600000000001 SRR1565805 brain normal 1.47532 SRR1565819 brain normal 1.34115 SRR1647682 spleen normal 1.31828 ERR594418 retina transgenic flk1 and develop tumors 1.28093 SRR514030 retina id2a morpholino 1.25557 SRR1565807 brain normal 1.2426700000000002 SRR1562530 liver normal 1.23568 SRR800045 muscle normal 1.15687 SRR592700 pineal gland normal 1.14801 SRR748489 egg normal 1.12576 SRR592698 pineal gland normal 1.01111 SRR372791 dome normal 0.9256770000000001 SRR891511 brain normal 0.8974260000000001 SRR1048059 pineal gland light 0.8969370000000001 ERR594416 retina transgenic flk1 0.8760100000000001 SRR1048061 pineal gland dark 0.840665 SRR748488 sperm normal 0.753306 SRR1021215 sphere stage Mzeomesa 0.370317 SRR800049 sphere stage control treatment 0.369101 ERR594417 retina normal 0.342479 SRR372787 2-4 cell normal 0.128971 SRR800043 sphere stage normal 0.113212 SRR748490 1 kcell normal 0.105055 SRR1021213 sphere stage normal 0.103527 SRR372789 1K cell normal 0.0801447 SRR1049814 256 cell normal 0.07161469999999999 SRR1621206 embryo normal 0.0503662 SRR800037 egg normal 0.0336673