sample tissue condition fpkm SRR1035978 13 hpf rx3-/- 84.5984 SRR527832 16-36 hpf normal 57.9972 SRR1035981 13 hpf rx3+/+ or rx3+/- 54.3274 SRR658543 6 somite Gata5 morphan 44.7436 SRR594769 blood normal 41.4052 SRR658541 6 somite normal 40.7102 SRR797908 embryo normal 37.2621 SRR797914 embryo pbx2/4-MO 36.3838 SRR797911 embryo prdm1-/- 36.0419 SRR658545 6 somite Gata6 morphant 33.411 SRR797917 embryo pbx2/4-MO and prdm1-/- 33.2293 SRR1035984 13 hpf normal 33.0693 SRR658537 bud Gata6 morphant 29.7376 SRR038624 embryo traf6 morpholino and bacterial infection 27.2148 SRR038625 embryo traf6 morpholino 21.2793 SRR749514 24 hpf normal 20.537 SRR658547 6 somite Gata5/6 morphant 19.3532 SRR594771 endothelium normal 18.2944 SRR065197 3 dpf U1C knockout 16.7493 SRR535926 larvae normal 15.9952 SRR535890 larvae normal 14.2669 SRR1039571 gastrointestinal diet 0.1 NPM 13.9332 SRR535943 larvae vangl mut 13.402999999999999 SRR519717 2 dpf FETOH treatment 13.1043 SRR1039573 gastrointestinal diet 0.75 NPM 12.6539 SRR749515 24 hpf eif3ha morphant 12.5178 SRR527833 5 dpf normal 12.3794 SRR658539 bud Gata5/6 morphant 11.0163 SRR1004787 larvae impdh1a morpholino 10.6518 SRR535913 larvae krox mut 10.5828 SRR610742 3 dpf express NICD 10.5784 SRR1004789 larvae impdh2 morpholino 10.4932 SRR700534 heart control morpholino 10.3035 SRR658535 bud Gata5 morphant 10.0539 SRR038627 embryo control morpholino 9.63183 SRR1004785 larvae normal 9.554089999999999 SRR1104058 heart normal 9.50912 SRR519737 2 dpf VD3 treatment 9.43366 SRR535851 larvae normal 9.26104 SRR633544 larvae exposed to cold stress 9.17576 SRR800045 muscle normal 9.06873 SRR1167756 embryo mpeg1 morpholino 8.99757 SRR527844 24hpf normal 8.72488 SRR527836 24hpf normal 8.68517 SRR1569495 embryo normal 8.31025 SRR633550 larvae exposed to hypoxia stress 8.28922 SRR038626 embryo control morpholino and bacterial infection 8.08661 SRR535847 larvae normal 7.903560000000001 SRR726542 5 dpf infection with control 7.8855699999999995 SRR700537 heart Gata4 morpholino 7.43722 SRR610740 3 dpf normal 7.347189999999999 SRR1004786 larvae control morpholino 7.18628 SRR633516 larvae normal 6.943169999999999 SRR065196 3 dpf normal 6.817010000000001 SRR1188148 embryo Control PBS 0.5 hpi 6.69998 SRR535848 larvae hoxb1b mut 6.5408 SRR801555 embryo RPS19 morpholino 6.36313 SRR535850 larvae hoxb1b mut 6.18307 SRR1035239 liver transgenic mCherry control 6.07452 SRR519732 7 dpf FETOH treatment 5.94878 SRR831692 embryo normal 5.9081 SRR1708343 embryo MUTAS 5.76954 SRR1005530 embryo RPL11 morpholino 5.76167 SRR726540 5 dpf normal 5.70905 SRR527840 24hpf normal 5.68882 SRR1188152 embryo Insulin 0.5 hpi 5.5235 SRR1708346 embryo SIBPS 5.39925 SRR658533 bud normal 5.28024 SRR1205169 5dpf transgenic sqET20 and neomycin treated 5h and GFP+ 5.16301 SRR1188156 embryo Control PBS 4 hpi 5.07801 SRR1188160 embryo Insulin 4 hpi 5.03001 SRR519747 6 dpf VD3 treatment 4.86621 SRR519727 6 dpf FETOH treatment 4.70629 SRR1035237 liver transgenic UHRF1 4.65638 SRR519742 4 dpf VD3 treatment 4.639130000000001 SRR1708344 embryo MUTPS 4.5978 SRR1005529 embryo control morpholino 4.5972599999999995 SRR801554 embryo control morpholino 4.59034 SRR1049952 embryo transgenic TgOMP-Gal4 and UAS-GCaMP1.6 and treated with gallein 4.5579 SRR1205160 5dpf transgenic sqET20 and GFP+ 4.49636 SRR519722 4 dpf FETOH treatment 4.46943 SRR1205163 5dpf transgenic sqET20 and neomycin treated 3h and GFP+ 4.46683 SRR535986 larvae nhsl1b mut 4.33875 SRR1205157 5dpf transgenic sqET20 and neomycin treated 1h and GFP+ 4.26593 SRR1523214 embryo glut12 morpholino 4.1512199999999995 SRR1028002 head normal 4.059819999999999 SRR1167762 embryo ptpn6 morpholino 3.87739 SRR800043 sphere stage normal 3.84036 SRR1167752 embryo normal 3.81196 SRR1004788 larvae impdh1b morpholino 3.7023900000000003 SRR1104059 heart kctd10 mut 3.6861300000000004 SRR372796 bud normal 3.67743 SRR776509 embryo Salmonella infected 3.6732699999999996 SRR800037 egg normal 3.6437800000000005 SRR748488 sperm normal 3.56911 SRR1028004 head normal 3.55913 SRR801556 embryo RPS19 and p53 morpholino 3.5440699999999996 SRR372798 28 hpf normal 3.51387 SRR1708345 embryo SIBAS 3.4389 SRR519752 7 dpf VD3 treatment 3.41759 SRR372802 5 dpf normal 3.36154 SRR372800 2 dpf normal 3.25557 SRR1049946 embryo transgenic TgOMP-Gal4 and UAS-GCaMP1.6 and treated with DMSO 3.1629099999999997 SRR535849 larvae normal 3.11295 SRR535978 larvae normal 3.08977 SRR1205154 5dpf transgenic sqET20 3.0594200000000003 SRR1342217 embryo infection with Mycobacterium marinum 2.92633 SRR1205151 5dpf transgenic sqET20 and neomycin treated 1h 2.8676 SRR1028003 head normal 2.84897 SRR1523211 embryo control morpholino 2.83984 SRR1205166 5dpf transgenic sqET20 and neomycin treated 3h 2.77604 SRR1569491 embryo normal 2.63656 SRR514028 retina control morpholino 2.5548599999999997 SRR610741 3 dpf express Ras 2.5194400000000003 SRR516132 skin male and 5 month 2.51825 SRR1167757 embryo mpeg1 morpholino and bacterial infection 2.34511 SRR535852 larvae hoxb1b mut 2.31779 SRR1342219 embryo marco morpholino and infection with Mycobacterium marinum 2.19781 SRR776508 embryo miR-146 knockdown 2.1508700000000003 SRR1167753 embryo bacterial infection 2.13551 SRR1647680 head kidney SVCV treatment 2.12835 SRR1647681 head kidney SVCV treatment 2.12771 SRR1342216 embryo norml 2.12322 SRR1342218 embryo marco morpholino 2.06393 SRR1534351 larvae 500 ug/l BDE47 treatment 2.0119 SRR514030 retina id2a morpholino 2.00623 SRR1205172 5dpf transgenic sqET20 and neomycin treated 5h 1.9179700000000002 SRR886456 256 cell 4-thio-UTP metabolic labeling 1.8710099999999998 SRR1291414 5 dpi normal 1.8289400000000002 SRR942769 embryo myd88+/+ 1.81885 SRR527834 head normal 1.8163099999999999 SRR942767 embryo myd88-/- and infection with Mycobacterium marinum 1.76909 SRR1534350 larvae 5 ug/l BDE47 treatment 1.6947 SRR1562533 testis normal 1.6823 SRR1534349 larvae DMSO vehicle 1.66555 SRR630464 5 dpf injected epidermidis 1.56348 SRR942772 embryo myd88+/+ and infection with Mycobacterium marinum 1.55341 SRR630463 5 dpf normal 1.5096 SRR776510 embryo Salmonella infected and miR-146 knockdown 1.50615 SRR800046 sphere stage 5azaCyD treatment 1.3459299999999998 SRR516123 skin male and 3.5 year 1.3454700000000002 SRR1299128 caudal fin Three days time after treatment 1.33751 SRR1648856 brain normal 1.2698 SRR1291417 5 dpi injected marinum 1.19519 SRR776507 embryo normal 1.1506100000000001 SRR1647679 head kidney normal 1.09789 SRR1167763 embryo ptpn6 morpholino and bacterial infection 1.09122 ERR145635 skeletal muscle 27 degree_C to 16 degree_C 1.06815 SRR1562531 muscle normal 1.0675700000000001 SRR1021215 sphere stage Mzeomesa 1.0412 SRR957181 heart normal 1.03478 ERR145631 skeletal muscle 32 degree_C to 16 degree_C 0.933103 SRR592703 pineal gland normal 0.932082 ERR145648 skeletal muscle 27 degree_C to 27 degree_C 0.915425 SRR886457 512 cell 4-thio-UTP metabolic labeling 0.906601 SRR1048059 pineal gland light 0.889985 SRR726541 5 dpf infection with Mycobacterium marinum 0.8310559999999999 ERR145646 skeletal muscle 32 degree_C to 27 degree_C 0.8071520000000001 SRR1299127 caudal fin Two days time after treatment 0.7714439999999999 SRR941753 posterior pectoral fin normal 0.7555390000000001 SRR516135 skin male and 5 month 0.7253189999999999 SRR516125 skin male and 3.5 year 0.678912 SRR1048061 pineal gland dark 0.674902 SRR516134 skin male and 5 month 0.660138 SRR1648854 brain normal 0.619596 SRR592698 pineal gland normal 0.593829 SRR1299129 caudal fin Seven days time after treatment 0.59328 SRR592702 pineal gland normal 0.5491739999999999 SRR957180 heart 7 days after heart tip amputation 0.5142329999999999 SRR1621206 embryo normal 0.512299 SRR941749 anterior pectoral fin normal 0.511857 SRR527835 tail normal 0.472793 SRR748489 egg normal 0.462963 SRR1647683 spleen SVCV treatment 0.43576000000000004 SRR372793 shield normal 0.424496 SRR516129 skin male and 5 month 0.403014 ERR594418 retina transgenic flk1 and develop tumors 0.401807 SRR372791 dome normal 0.39926500000000004 SRR1021213 sphere stage normal 0.39181900000000003 SRR1565805 brain normal 0.38204099999999996 SRR891510 muscle normal 0.33067199999999997 SRR1562528 eye normal 0.312651 ERR023143 swim bladder normal 0.278167 SRR1565815 brain normal 0.277163 ERR594416 retina transgenic flk1 0.27652899999999997 SRR1565807 brain normal 0.254364 SRR372787 2-4 cell normal 0.24965199999999999 SRR516126 skin male and 5 month 0.24243499999999998 SRR1565809 brain normal 0.241114 SRR1647684 spleen SVCV treatment 0.23428600000000002 SRR1565811 brain normal 0.216207 SRR1049814 256 cell normal 0.214763 SRR1565819 brain normal 0.208456 ERR023144 brain normal 0.19784000000000002 ERR594417 retina normal 0.18857000000000002 SRR1299124 caudal fin Zero day time after treatment 0.139018 SRR516127 skin male and 5 month 0.132116 SRR372789 1K cell normal 0.112642 SRR516122 skin male and 3.5 year 0.10446400000000002 SRR748490 1 kcell normal 0.10386400000000001 SRR592701 pineal gland normal 0.0954606 SRR1299125 caudal fin Half day time after treatment 0.0768641 SRR1565817 brain normal 0.0737757 SRR516130 skin male and 5 month 0.0695187 SRR1565813 brain normal 0.0566913 SRR592699 pineal gland normal 0.0479614 SRR1562529 intestine and pancreas normal 0.032992099999999996 SRR942764 embryo myd88-/- 0.011306100000000001 SRR1562532 spleen normal 0.00031815 SRR886455 128 cell 4-thio-UTP metabolic labeling 0.000239481 SRR1647682 spleen normal 4.6713500000000006e-05 SRR800049 sphere stage control treatment 1.58516e-05