sample tissue condition fpkm SRR891504 liver normal 77.4828 SRR1562530 liver normal 68.4943 SRR1035239 liver transgenic mCherry control 55.4177 SRR1299128 caudal fin Three days time after treatment 40.3707 SRR1299129 caudal fin Seven days time after treatment 33.1384 SRR1205157 5dpf transgenic sqET20 and neomycin treated 1h and GFP+ 21.6598 SRR1205163 5dpf transgenic sqET20 and neomycin treated 3h and GFP+ 21.4011 SRR1205160 5dpf transgenic sqET20 and GFP+ 20.5544 SRR1049952 embryo transgenic TgOMP-Gal4 and UAS-GCaMP1.6 and treated with gallein 20.0417 SRR516127 skin male and 5 month 19.4122 SRR1205169 5dpf transgenic sqET20 and neomycin treated 5h and GFP+ 17.0115 SRR516126 skin male and 5 month 16.7546 SRR065197 3 dpf U1C knockout 14.5881 ERR023146 head kidney normal 14.4803 SRR1167763 embryo ptpn6 morpholino and bacterial infection 14.3387 ERR023143 swim bladder normal 13.0547 SRR610742 3 dpf express NICD 12.8293 SRR1291417 5 dpi injected marinum 12.6339 SRR516131 skin male and 5 month 12.1354 SRR516132 skin male and 5 month 11.8925 SRR516130 skin male and 5 month 11.7681 SRR1299127 caudal fin Two days time after treatment 11.546 SRR1167757 embryo mpeg1 morpholino and bacterial infection 11.5062 SRR1167762 embryo ptpn6 morpholino 11.3943 SRR516129 skin male and 5 month 11.2769 SRR1647682 spleen normal 11.2684 SRR516128 skin male and 5 month 11.2019 SRR1049946 embryo transgenic TgOMP-Gal4 and UAS-GCaMP1.6 and treated with DMSO 11.0992 SRR1039571 gastrointestinal diet 0.1 NPM 11.0013 SRR942772 embryo myd88+/+ and infection with Mycobacterium marinum 10.7004 SRR1167753 embryo bacterial infection 10.6121 SRR516133 skin male and 5 month 10.5746 SRR1188156 embryo Control PBS 4 hpi 10.2438 SRR1188148 embryo Control PBS 0.5 hpi 10.1764 SRR1342219 embryo marco morpholino and infection with Mycobacterium marinum 10.1559 SRR516122 skin male and 3.5 year 10.078 SRR516134 skin male and 5 month 10.0022 SRR1167756 embryo mpeg1 morpholino 9.94205 SRR527833 5 dpf normal 9.88988 SRR942767 embryo myd88-/- and infection with Mycobacterium marinum 9.87796 SRR630463 5 dpf normal 9.87295 SRR1523211 embryo control morpholino 9.87169 SRR942769 embryo myd88+/+ 9.73648 SRR516135 skin male and 5 month 9.64659 SRR1188160 embryo Insulin 4 hpi 9.53603 ERR023144 brain normal 9.482560000000001 SRR592698 pineal gland normal 9.399519999999999 SRR519742 4 dpf VD3 treatment 9.37831 SRR1188152 embryo Insulin 0.5 hpi 9.31286 SRR1167752 embryo normal 9.30613 SRR630464 5 dpf injected epidermidis 9.256110000000001 SRR1291414 5 dpi normal 9.23982 SRR592699 pineal gland normal 9.1233 SRR633544 larvae exposed to cold stress 9.036480000000001 SRR1342218 embryo marco morpholino 8.96284 SRR1647683 spleen SVCV treatment 8.94612 SRR1342217 embryo infection with Mycobacterium marinum 8.91985 SRR1569491 embryo normal 8.89208 SRR1562532 spleen normal 8.83447 SRR519752 7 dpf VD3 treatment 8.82864 SRR942764 embryo myd88-/- 8.80382 SRR519747 6 dpf VD3 treatment 8.79345 SRR633550 larvae exposed to hypoxia stress 8.64837 SRR1035237 liver transgenic UHRF1 8.61765 SRR519722 4 dpf FETOH treatment 8.60765 SRR726540 5 dpf normal 8.566989999999999 SRR1562529 intestine and pancreas normal 8.5625 SRR1342216 embryo norml 8.551160000000001 SRR1523214 embryo glut12 morpholino 8.518419999999999 SRR065196 3 dpf normal 8.51435 SRR516125 skin male and 3.5 year 8.49422 SRR516123 skin male and 3.5 year 8.33835 SRR726541 5 dpf infection with Mycobacterium marinum 8.27086 SRR594769 blood normal 8.178930000000001 SRR519727 6 dpf FETOH treatment 8.10783 SRR519732 7 dpf FETOH treatment 8.02482 SRR1562528 eye normal 7.86481 SRR592702 pineal gland normal 7.81548 SRR1647684 spleen SVCV treatment 7.776660000000001 SRR891510 muscle normal 7.75508 SRR516124 skin male and 3.5 year 7.62705 SRR594771 endothelium normal 7.60885 SRR519737 2 dpf VD3 treatment 7.57096 SRR633516 larvae normal 7.38755 SRR592703 pineal gland normal 7.2839 SRR726542 5 dpf infection with control 7.23561 SRR519717 2 dpf FETOH treatment 7.01928 SRR610741 3 dpf express Ras 7.00553 SRR527834 head normal 6.92617 SRR891511 brain normal 6.81716 SRR592701 pineal gland normal 6.78218 SRR1039573 gastrointestinal diet 0.75 NPM 6.7463 SRR610740 3 dpf normal 6.739160000000001 SRR527840 24hpf normal 6.71585 SRR1048061 pineal gland dark 6.70056 ERR023145 heart normal 6.65683 SRR1205166 5dpf transgenic sqET20 and neomycin treated 3h 6.5751 SRR1569495 embryo normal 6.51123 SRR797914 embryo pbx2/4-MO 6.4195199999999994 SRR535848 larvae hoxb1b mut 6.38893 SRR516121 skin male and 3.5 year 6.31655 SRR535978 larvae normal 6.30636 SRR535852 larvae hoxb1b mut 6.288959999999999 SRR700537 heart Gata4 morpholino 6.28252 SRR1205172 5dpf transgenic sqET20 and neomycin treated 5h 6.25724 SRR831692 embryo normal 6.16421 SRR797917 embryo pbx2/4-MO and prdm1-/- 6.12788 ERR145646 skeletal muscle 32 degree_C to 27 degree_C 6.103680000000001 SRR1708346 embryo SIBPS 5.99199 SRR535847 larvae normal 5.9849 SRR1048059 pineal gland light 5.96954 SRR1534349 larvae DMSO vehicle 5.87169 SRR527836 24hpf normal 5.85482 SRR535849 larvae normal 5.85079 SRR535851 larvae normal 5.7655 SRR1562531 muscle normal 5.76054 SRR1534350 larvae 5 ug/l BDE47 treatment 5.76006 SRR1005529 embryo control morpholino 5.74937 SRR801554 embryo control morpholino 5.74073 SRR941749 anterior pectoral fin normal 5.69222 ERR594417 retina normal 5.66429 SRR1205154 5dpf transgenic sqET20 5.5498 SRR1299124 caudal fin Zero day time after treatment 5.54726 SRR535850 larvae hoxb1b mut 5.54349 ERR594416 retina transgenic flk1 5.54136 ERR145631 skeletal muscle 32 degree_C to 16 degree_C 5.47877 SRR1028002 head normal 5.461869999999999 ERR145635 skeletal muscle 27 degree_C to 16 degree_C 5.37599 SRR592700 pineal gland normal 5.374709999999999 SRR1205151 5dpf transgenic sqET20 and neomycin treated 1h 5.3314900000000005 SRR527844 24hpf normal 5.28062 SRR535986 larvae nhsl1b mut 5.2748 SRR700534 heart control morpholino 5.2458 SRR1534351 larvae 500 ug/l BDE47 treatment 5.17764 ERR145648 skeletal muscle 27 degree_C to 27 degree_C 5.14238 SRR1028004 head normal 5.13762 SRR1104058 heart normal 4.96471 SRR801555 embryo RPS19 morpholino 4.91423 SRR776508 embryo miR-146 knockdown 4.91207 SRR797911 embryo prdm1-/- 4.85895 SRR801556 embryo RPS19 and p53 morpholino 4.84972 SRR797908 embryo normal 4.82008 SRR1708344 embryo MUTPS 4.80083 SRR658533 bud normal 4.72184 SRR749515 24 hpf eif3ha morphant 4.719040000000001 SRR776507 embryo normal 4.70217 SRR038627 embryo control morpholino 4.69986 SRR1565811 brain normal 4.67017 SRR1708345 embryo SIBAS 4.66919 SRR941753 posterior pectoral fin normal 4.52045 SRR1104059 heart kctd10 mut 4.51766 SRR749514 24 hpf normal 4.51595 SRR1708343 embryo MUTAS 4.43904 SRR038624 embryo traf6 morpholino and bacterial infection 4.4275 SRR1565809 brain normal 4.42014 SRR1565817 brain normal 4.3563 SRR1647681 head kidney SVCV treatment 4.22872 SRR038625 embryo traf6 morpholino 4.21453 SRR527832 16-36 hpf normal 4.08938 SRR038626 embryo control morpholino and bacterial infection 4.08539 SRR748489 egg normal 4.04015 SRR776510 embryo Salmonella infected and miR-146 knockdown 4.03598 SRR658537 bud Gata6 morphant 4.03417 SRR1565815 brain normal 3.98896 SRR1028003 head normal 3.96812 SRR1005530 embryo RPL11 morpholino 3.87315 SRR1565819 brain normal 3.8610900000000004 SRR1565805 brain normal 3.74819 SRR1565807 brain normal 3.7214699999999996 SRR776509 embryo Salmonella infected 3.71906 ERR594418 retina transgenic flk1 and develop tumors 3.66949 SRR1565813 brain normal 3.66431 SRR658541 6 somite normal 3.5439599999999998 SRR535913 larvae krox mut 3.5243599999999997 SRR1035981 13 hpf rx3+/+ or rx3+/- 3.4526800000000004 SRR535890 larvae normal 3.24373 SRR535943 larvae vangl mut 3.2206099999999998 SRR1004788 larvae impdh1b morpholino 3.19778 SRR658543 6 somite Gata5 morphan 3.0634 SRR891495 heart normal 3.0102 SRR658545 6 somite Gata6 morphant 2.93876 SRR658539 bud Gata5/6 morphant 2.90951 SRR535926 larvae normal 2.87245 SRR658535 bud Gata5 morphant 2.8282 SRR1035984 13 hpf normal 2.82298 SRR1004785 larvae normal 2.75435 SRR1299126 caudal fin One day time after treatment 2.75425 SRR658547 6 somite Gata5/6 morphant 2.72315 SRR1299125 caudal fin Half day time after treatment 2.61349 SRR1004789 larvae impdh2 morpholino 2.55606 SRR1035978 13 hpf rx3-/- 2.51125 SRR527835 tail normal 2.49847 SRR1647680 head kidney SVCV treatment 2.3991700000000002 SRR1021213 sphere stage normal 2.10852 SRR1021215 sphere stage Mzeomesa 2.0554200000000002 SRR886456 256 cell 4-thio-UTP metabolic labeling 2.03081 SRR886455 128 cell 4-thio-UTP metabolic labeling 1.88332 SRR1004787 larvae impdh1a morpholino 1.88002 SRR1647679 head kidney normal 1.82405 SRR800045 muscle normal 1.8236 SRR514028 retina control morpholino 1.7863900000000001 SRR748491 germ ring normal 1.7417099999999999 SRR891512 blood normal 1.5652700000000002 SRR1004786 larvae control morpholino 1.46688 SRR1562533 testis normal 1.3941700000000001 SRR748490 1 kcell normal 1.39117 SRR514030 retina id2a morpholino 1.28326 SRR886457 512 cell 4-thio-UTP metabolic labeling 1.21756 SRR748488 sperm normal 0.9107930000000001 SRR800046 sphere stage 5azaCyD treatment 0.47211899999999996 SRR800043 sphere stage normal 0.20910900000000002 SRR800049 sphere stage control treatment 0.174051 SRR800037 egg normal 0.15523800000000001 SRR957180 heart 7 days after heart tip amputation 0.04188119999999999 SRR1648854 brain normal 0.0269546 SRR1648855 brain normal 0.0255277 SRR957181 heart normal 0.019077700000000003 SRR372800 2 dpf normal 0.014660499999999998 SRR1648856 brain normal 0.004917