sample tissue condition fpkm SRR1562529 intestine and pancreas normal 16.1829 SRR1039571 gastrointestinal diet 0.1 NPM 12.9005 SRR1039573 gastrointestinal diet 0.75 NPM 10.7248 SRR1534351 larvae 500 ug/l BDE47 treatment 10.4098 SRR658539 bud Gata5/6 morphant 9.19459 SRR658533 bud normal 9.11566 SRR1534350 larvae 5 ug/l BDE47 treatment 7.89945 SRR749514 24 hpf normal 7.883089999999999 SRR658547 6 somite Gata5/6 morphant 7.75404 SRR658535 bud Gata5 morphant 7.350810000000001 SRR658545 6 somite Gata6 morphant 7.12383 SRR658537 bud Gata6 morphant 7.117030000000001 SRR700534 heart control morpholino 6.679360000000001 SRR749515 24 hpf eif3ha morphant 6.33488 SRR592700 pineal gland normal 6.06083 SRR372802 5 dpf normal 5.9416400000000005 SRR1028002 head normal 5.6973199999999995 SRR592701 pineal gland normal 5.58716 SRR797908 embryo normal 5.45472 SRR610741 3 dpf express Ras 5.33134 SRR658543 6 somite Gata5 morphan 5.3269 SRR592702 pineal gland normal 5.32624 SRR1035978 13 hpf rx3-/- 5.12628 SRR1028004 head normal 5.0658199999999995 SRR1005530 embryo RPL11 morpholino 5.0437 SRR658541 6 somite normal 4.9029 ERR023146 head kidney normal 4.82266 SRR592699 pineal gland normal 4.76588 SRR797917 embryo pbx2/4-MO and prdm1-/- 4.73681 ERR023143 swim bladder normal 4.71945 SRR516127 skin male and 5 month 4.601030000000001 SRR1647679 head kidney normal 4.59082 SRR797914 embryo pbx2/4-MO 4.569369999999999 SRR1035239 liver transgenic mCherry control 4.54822 SRR527833 5 dpf normal 4.53326 SRR1035984 13 hpf normal 4.4474 SRR610742 3 dpf express NICD 4.44372 SRR700537 heart Gata4 morpholino 4.36365 SRR1035981 13 hpf rx3+/+ or rx3+/- 4.3081 SRR516125 skin male and 3.5 year 4.24769 SRR1048061 pineal gland dark 4.2205 SRR1647684 spleen SVCV treatment 4.09375 SRR1004785 larvae normal 4.0707699999999996 SRR1534349 larvae DMSO vehicle 3.9916400000000003 SRR1028003 head normal 3.9483800000000002 SRR1647683 spleen SVCV treatment 3.9459 SRR592703 pineal gland normal 3.8992400000000003 SRR519747 6 dpf VD3 treatment 3.8753800000000003 SRR535943 larvae vangl mut 3.87006 SRR519752 7 dpf VD3 treatment 3.826 SRR1005529 embryo control morpholino 3.8112800000000004 SRR801554 embryo control morpholino 3.80555 SRR797911 embryo prdm1-/- 3.7663800000000003 SRR527832 16-36 hpf normal 3.7474 SRR038625 embryo traf6 morpholino 3.72105 SRR1523214 embryo glut12 morpholino 3.68561 SRR592698 pineal gland normal 3.6124699999999996 SRR941749 anterior pectoral fin normal 3.61194 SRR891504 liver normal 3.60095 SRR535849 larvae normal 3.5464300000000004 SRR535913 larvae krox mut 3.53915 SRR801556 embryo RPS19 and p53 morpholino 3.3820900000000003 SRR372796 bud normal 3.33316 ERR594418 retina transgenic flk1 and develop tumors 3.3243400000000003 SRR633516 larvae normal 3.30735 SRR516124 skin male and 3.5 year 3.2822400000000003 ERR145646 skeletal muscle 32 degree_C to 27 degree_C 3.24479 SRR1562533 testis normal 3.24213 SRR527836 24hpf normal 3.2241299999999997 SRR801555 embryo RPS19 morpholino 3.1993099999999997 SRR941753 posterior pectoral fin normal 3.16023 SRR535926 larvae normal 3.15848 SRR633550 larvae exposed to hypoxia stress 3.0951 SRR1647681 head kidney SVCV treatment 3.06977 SRR519727 6 dpf FETOH treatment 3.0660000000000003 ERR145648 skeletal muscle 27 degree_C to 27 degree_C 3.06185 SRR519742 4 dpf VD3 treatment 3.0380700000000003 ERR594417 retina normal 2.9493099999999997 SRR519732 7 dpf FETOH treatment 2.94575 SRR519722 4 dpf FETOH treatment 2.92315 SRR372798 28 hpf normal 2.9173 SRR1167752 embryo normal 2.91547 SRR1562532 spleen normal 2.88836 SRR535890 larvae normal 2.8738799999999998 SRR038626 embryo control morpholino and bacterial infection 2.8113200000000003 SRR1004789 larvae impdh2 morpholino 2.80368 SRR610740 3 dpf normal 2.79534 SRR1035237 liver transgenic UHRF1 2.7871099999999998 SRR1004787 larvae impdh1a morpholino 2.78535 SRR535850 larvae hoxb1b mut 2.7503599999999997 SRR633544 larvae exposed to cold stress 2.69882 SRR519717 2 dpf FETOH treatment 2.68282 SRR891510 muscle normal 2.63173 SRR372793 shield normal 2.62869 ERR594416 retina transgenic flk1 2.62224 SRR519737 2 dpf VD3 treatment 2.56766 SRR594769 blood normal 2.55946 SRR535848 larvae hoxb1b mut 2.55345 SRR776509 embryo Salmonella infected 2.51074 SRR527840 24hpf normal 2.49303 SRR1188148 embryo Control PBS 0.5 hpi 2.43301 ERR023144 brain normal 2.41087 SRR1647682 spleen normal 2.4032299999999998 SRR1647680 head kidney SVCV treatment 2.38269 SRR1562530 liver normal 2.3690599999999997 SRR1205163 5dpf transgenic sqET20 and neomycin treated 3h and GFP+ 2.33307 ERR023145 heart normal 2.32973 SRR1523211 embryo control morpholino 2.32864 SRR1188156 embryo Control PBS 4 hpi 2.3071599999999997 SRR535851 larvae normal 2.30402 SRR1569495 embryo normal 2.29471 SRR1565813 brain normal 2.26947 SRR1565817 brain normal 2.25293 SRR1205166 5dpf transgenic sqET20 and neomycin treated 3h 2.24098 SRR527844 24hpf normal 2.23687 SRR516131 skin male and 5 month 2.1147 SRR1167756 embryo mpeg1 morpholino 2.1027 SRR1205157 5dpf transgenic sqET20 and neomycin treated 1h and GFP+ 2.09999 SRR1342218 embryo marco morpholino 2.0859400000000003 SRR065197 3 dpf U1C knockout 2.07155 SRR372800 2 dpf normal 2.069 SRR1648855 brain normal 2.0497 SRR1205151 5dpf transgenic sqET20 and neomycin treated 1h 2.00293 SRR1562531 muscle normal 1.98945 SRR535847 larvae normal 1.98449 SRR748491 germ ring normal 1.98095 SRR1299124 caudal fin Zero day time after treatment 1.97976 SRR1565815 brain normal 1.9637099999999998 SRR891511 brain normal 1.96258 SRR891512 blood normal 1.8863900000000002 SRR957180 heart 7 days after heart tip amputation 1.8824599999999998 SRR535852 larvae hoxb1b mut 1.84897 SRR1205154 5dpf transgenic sqET20 1.8220599999999998 SRR1708343 embryo MUTAS 1.81565 SRR594771 endothelium normal 1.79305 SRR1205169 5dpf transgenic sqET20 and neomycin treated 5h and GFP+ 1.7762900000000001 SRR1167753 embryo bacterial infection 1.76827 SRR516126 skin male and 5 month 1.71314 SRR891495 heart normal 1.6959 SRR1188160 embryo Insulin 4 hpi 1.6927299999999998 SRR1205172 5dpf transgenic sqET20 and neomycin treated 5h 1.62927 SRR038624 embryo traf6 morpholino and bacterial infection 1.62147 SRR516128 skin male and 5 month 1.57324 SRR1565819 brain normal 1.55752 SRR1188152 embryo Insulin 0.5 hpi 1.55666 SRR1565811 brain normal 1.54277 SRR1205160 5dpf transgenic sqET20 and GFP+ 1.5290700000000002 ERR145631 skeletal muscle 32 degree_C to 16 degree_C 1.51349 SRR630463 5 dpf normal 1.49289 SRR831692 embryo normal 1.4928 SRR516130 skin male and 5 month 1.4714 SRR1004786 larvae control morpholino 1.44126 SRR726541 5 dpf infection with Mycobacterium marinum 1.4244 SRR1621206 embryo normal 1.39775 SRR516123 skin male and 3.5 year 1.3809200000000001 SRR1569491 embryo normal 1.34486 SRR1104059 heart kctd10 mut 1.33023 SRR1167763 embryo ptpn6 morpholino and bacterial infection 1.3259999999999998 SRR1049814 256 cell normal 1.3204200000000001 SRR1565805 brain normal 1.3197 SRR957181 heart normal 1.3099 ERR145635 skeletal muscle 27 degree_C to 16 degree_C 1.29465 SRR516129 skin male and 5 month 1.2758200000000002 SRR1342219 embryo marco morpholino and infection with Mycobacterium marinum 1.26673 SRR1004788 larvae impdh1b morpholino 1.22771 SRR748488 sperm normal 1.21295 SRR1342217 embryo infection with Mycobacterium marinum 1.2129 SRR1708346 embryo SIBPS 1.20015 SRR776508 embryo miR-146 knockdown 1.1240700000000001 SRR630464 5 dpf injected epidermidis 1.11881 SRR1104058 heart normal 1.1155899999999999 SRR1562528 eye normal 1.1154 SRR1565807 brain normal 1.0533299999999999 SRR748490 1 kcell normal 1.03883 SRR800045 muscle normal 1.0208899999999999 SRR942764 embryo myd88-/- 0.986807 SRR1299128 caudal fin Three days time after treatment 0.942005 SRR942772 embryo myd88+/+ and infection with Mycobacterium marinum 0.9315829999999999 SRR527834 head normal 0.917573 SRR516121 skin male and 3.5 year 0.832586 SRR1291417 5 dpi injected marinum 0.7864979999999999 SRR1048059 pineal gland light 0.772224 SRR1299129 caudal fin Seven days time after treatment 0.770018 SRR1565809 brain normal 0.731083 SRR776507 embryo normal 0.728769 SRR776510 embryo Salmonella infected and miR-146 knockdown 0.708213 SRR372787 2-4 cell normal 0.702607 SRR1299126 caudal fin One day time after treatment 0.687543 SRR1342216 embryo norml 0.6849149999999999 SRR1648854 brain normal 0.663567 SRR1167762 embryo ptpn6 morpholino 0.654233 SRR372791 dome normal 0.60448 SRR1708345 embryo SIBAS 0.593533 SRR1021215 sphere stage Mzeomesa 0.571408 SRR1167757 embryo mpeg1 morpholino and bacterial infection 0.521651 SRR065196 3 dpf normal 0.500502 SRR1299127 caudal fin Two days time after treatment 0.48660699999999996 SRR372789 1K cell normal 0.48367299999999996 SRR514028 retina control morpholino 0.44912399999999997 SRR800037 egg normal 0.41547399999999995 SRR1299125 caudal fin Half day time after treatment 0.369979 SRR1708344 embryo MUTPS 0.33913000000000004 SRR1291414 5 dpi normal 0.241644 SRR516122 skin male and 3.5 year 0.233801 SRR942769 embryo myd88+/+ 0.18423699999999998 SRR514030 retina id2a morpholino 0.179557 SRR1021213 sphere stage normal 0.14422100000000002 SRR726542 5 dpf infection with control 0.0874045 SRR1049946 embryo transgenic TgOMP-Gal4 and UAS-GCaMP1.6 and treated with DMSO 0.0735346 SRR800043 sphere stage normal 5.73936e-05 SRR886455 128 cell 4-thio-UTP metabolic labeling 1.88729e-05