sample tissue condition fpkm SRR1562530 liver normal 84.5419 SRR1035239 liver transgenic mCherry control 22.3254 SRR1035237 liver transgenic UHRF1 15.304 ERR023146 head kidney normal 14.5642 SRR1562529 intestine and pancreas normal 11.6375 SRR891504 liver normal 11.2521 ERR023144 brain normal 10.584000000000001 SRR535978 larvae normal 10.4662 SRR535986 larvae nhsl1b mut 9.55195 SRR831692 embryo normal 8.80601 SRR1562532 spleen normal 8.77079 SRR1523211 embryo control morpholino 8.679039999999999 SRR1205163 5dpf transgenic sqET20 and neomycin treated 3h and GFP+ 8.32277 SRR1523214 embryo glut12 morpholino 8.14403 SRR1167756 embryo mpeg1 morpholino 8.01646 SRR610742 3 dpf express NICD 7.909110000000001 SRR610740 3 dpf normal 7.77796 ERR023143 swim bladder normal 7.59532 SRR1205160 5dpf transgenic sqET20 and GFP+ 7.591889999999999 SRR1205169 5dpf transgenic sqET20 and neomycin treated 5h and GFP+ 7.45949 SRR1565805 brain normal 7.292839999999999 SRR1167752 embryo normal 7.2766 SRR1205157 5dpf transgenic sqET20 and neomycin treated 1h and GFP+ 7.21005 SRR1299124 caudal fin Zero day time after treatment 7.148 SRR1291414 5 dpi normal 6.90572 SRR1188160 embryo Insulin 4 hpi 6.89927 SRR1342217 embryo infection with Mycobacterium marinum 6.88323 SRR942769 embryo myd88+/+ 6.84549 SRR1708346 embryo SIBPS 6.84307 SRR1565807 brain normal 6.79898 SRR1342218 embryo marco morpholino 6.79886 SRR630463 5 dpf normal 6.733389999999999 SRR1565813 brain normal 6.71775 SRR1565809 brain normal 6.6969 SRR1167753 embryo bacterial infection 6.66441 SRR1188152 embryo Insulin 0.5 hpi 6.66142 SRR519742 4 dpf VD3 treatment 6.650289999999999 SRR1342216 embryo norml 6.641139999999999 SRR535943 larvae vangl mut 6.53829 SRR610741 3 dpf express Ras 6.5338400000000005 SRR519722 4 dpf FETOH treatment 6.46614 SRR1342219 embryo marco morpholino and infection with Mycobacterium marinum 6.4185300000000005 SRR630464 5 dpf injected epidermidis 6.390569999999999 SRR535926 larvae normal 6.35136 SRR1648854 brain normal 6.34994 SRR1167757 embryo mpeg1 morpholino and bacterial infection 6.33631 SRR1565811 brain normal 6.25933 SRR1565815 brain normal 6.2152 SRR527840 24hpf normal 6.12863 SRR1167763 embryo ptpn6 morpholino and bacterial infection 6.127619999999999 SRR797917 embryo pbx2/4-MO and prdm1-/- 5.9877400000000005 SRR527836 24hpf normal 5.94036 SRR942772 embryo myd88+/+ and infection with Mycobacterium marinum 5.90686 SRR527833 5 dpf normal 5.87865 SRR942764 embryo myd88-/- 5.8726400000000005 SRR1299127 caudal fin Two days time after treatment 5.82487 SRR1188148 embryo Control PBS 0.5 hpi 5.81635 SRR535913 larvae krox mut 5.80675 SRR726540 5 dpf normal 5.75122 ERR145646 skeletal muscle 32 degree_C to 27 degree_C 5.7027 SRR1291417 5 dpi injected marinum 5.60392 SRR1565819 brain normal 5.58435 SRR776508 embryo miR-146 knockdown 5.5795900000000005 SRR1299126 caudal fin One day time after treatment 5.5281400000000005 SRR535852 larvae hoxb1b mut 5.5141 SRR535850 larvae hoxb1b mut 5.51066 SRR797908 embryo normal 5.50966 SRR519737 2 dpf VD3 treatment 5.48957 SRR1299128 caudal fin Three days time after treatment 5.4787 SRR1708344 embryo MUTPS 5.4667 SRR1565817 brain normal 5.4446900000000005 SRR749515 24 hpf eif3ha morphant 5.37975 SRR535847 larvae normal 5.37718 SRR1299129 caudal fin Seven days time after treatment 5.36586 SRR065197 3 dpf U1C knockout 5.35461 SRR516134 skin male and 5 month 5.33209 SRR519717 2 dpf FETOH treatment 5.33157 ERR023145 heart normal 5.33073 SRR1647682 spleen normal 5.301880000000001 SRR1039571 gastrointestinal diet 0.1 NPM 5.27305 SRR1104059 heart kctd10 mut 5.27194 SRR797914 embryo pbx2/4-MO 5.24431 SRR1188156 embryo Control PBS 4 hpi 5.23261 SRR535848 larvae hoxb1b mut 5.16538 SRR065196 3 dpf normal 5.07766 SRR516128 skin male and 5 month 5.0043 SRR1004788 larvae impdh1b morpholino 5.00279 SRR535851 larvae normal 4.9852099999999995 SRR519752 7 dpf VD3 treatment 4.96106 SRR797911 embryo prdm1-/- 4.92542 SRR942767 embryo myd88-/- and infection with Mycobacterium marinum 4.84466 SRR535890 larvae normal 4.82848 SRR1167762 embryo ptpn6 morpholino 4.8205 SRR516124 skin male and 3.5 year 4.79664 SRR1648855 brain normal 4.76941 SRR633544 larvae exposed to cold stress 4.75971 SRR535849 larvae normal 4.73998 SRR519747 6 dpf VD3 treatment 4.702459999999999 SRR1205151 5dpf transgenic sqET20 and neomycin treated 1h 4.69434 SRR1205166 5dpf transgenic sqET20 and neomycin treated 3h 4.68436 SRR891511 brain normal 4.65342 SRR633550 larvae exposed to hypoxia stress 4.64614 SRR749514 24 hpf normal 4.62338 SRR700534 heart control morpholino 4.611269999999999 SRR516126 skin male and 5 month 4.6112 SRR726541 5 dpf infection with Mycobacterium marinum 4.59954 SRR516127 skin male and 5 month 4.57493 SRR1708345 embryo SIBAS 4.57451 SRR1205172 5dpf transgenic sqET20 and neomycin treated 5h 4.56712 ERR145648 skeletal muscle 27 degree_C to 27 degree_C 4.55628 SRR527844 24hpf normal 4.5062 SRR527832 16-36 hpf normal 4.482080000000001 SRR1299125 caudal fin Half day time after treatment 4.46019 SRR1205154 5dpf transgenic sqET20 4.4595400000000005 SRR700537 heart Gata4 morpholino 4.4347900000000005 SRR519727 6 dpf FETOH treatment 4.40214 SRR372802 5 dpf normal 4.28721 SRR658541 6 somite normal 4.25478 SRR1039573 gastrointestinal diet 0.75 NPM 4.24899 SRR516130 skin male and 5 month 4.24043 SRR633516 larvae normal 4.0875699999999995 SRR776510 embryo Salmonella infected and miR-146 knockdown 4.08585 ERR145631 skeletal muscle 32 degree_C to 16 degree_C 4.04973 ERR145635 skeletal muscle 27 degree_C to 16 degree_C 4.0178199999999995 SRR726542 5 dpf infection with control 4.00745 SRR776509 embryo Salmonella infected 3.9738599999999997 SRR1028003 head normal 3.86407 SRR1104058 heart normal 3.8605099999999997 SRR516131 skin male and 5 month 3.83984 SRR658543 6 somite Gata5 morphan 3.81607 SRR592703 pineal gland normal 3.78747 SRR038624 embryo traf6 morpholino and bacterial infection 3.7856 SRR038625 embryo traf6 morpholino 3.7770599999999996 ERR594417 retina normal 3.7184199999999996 SRR592700 pineal gland normal 3.66477 SRR1708343 embryo MUTAS 3.6136699999999995 SRR1049952 embryo transgenic TgOMP-Gal4 and UAS-GCaMP1.6 and treated with gallein 3.5550300000000004 SRR519732 7 dpf FETOH treatment 3.5402 ERR594418 retina transgenic flk1 and develop tumors 3.5015199999999997 SRR1035978 13 hpf rx3-/- 3.49306 SRR1028004 head normal 3.46825 SRR1028002 head normal 3.4582 SRR592702 pineal gland normal 3.38389 SRR516121 skin male and 3.5 year 3.37817 SRR658545 6 somite Gata6 morphant 3.3764300000000005 SRR592698 pineal gland normal 3.37028 SRR1035981 13 hpf rx3+/+ or rx3+/- 3.37 SRR1562528 eye normal 3.3682300000000005 SRR1049946 embryo transgenic TgOMP-Gal4 and UAS-GCaMP1.6 and treated with DMSO 3.36154 SRR658547 6 somite Gata5/6 morphant 3.36084 SRR516123 skin male and 3.5 year 3.3513300000000004 SRR1562531 muscle normal 3.3250900000000003 SRR516122 skin male and 3.5 year 3.3069599999999997 SRR516125 skin male and 3.5 year 3.2999400000000003 SRR776507 embryo normal 3.2831 SRR038627 embryo control morpholino 3.23153 ERR594416 retina transgenic flk1 3.1741 SRR527834 head normal 3.12996 SRR516129 skin male and 5 month 3.12683 SRR372800 2 dpf normal 3.09234 SRR594769 blood normal 3.00542 SRR594771 endothelium normal 3.00263 SRR658537 bud Gata6 morphant 2.98751 SRR941749 anterior pectoral fin normal 2.98612 SRR658533 bud normal 2.98354 SRR1534349 larvae DMSO vehicle 2.97948 SRR1004785 larvae normal 2.9338 SRR957180 heart 7 days after heart tip amputation 2.73322 SRR957181 heart normal 2.72496 SRR038626 embryo control morpholino and bacterial infection 2.69467 SRR1004789 larvae impdh2 morpholino 2.65461 SRR658535 bud Gata5 morphant 2.65213 SRR372798 28 hpf normal 2.63404 SRR1534350 larvae 5 ug/l BDE47 treatment 2.6282900000000002 SRR1648856 brain normal 2.6184 SRR1569491 embryo normal 2.60875 SRR1004786 larvae control morpholino 2.59879 SRR1005529 embryo control morpholino 2.49744 SRR801554 embryo control morpholino 2.49369 SRR658539 bud Gata5/6 morphant 2.45323 SRR1035984 13 hpf normal 2.43268 SRR1647681 head kidney SVCV treatment 2.3833 SRR1534351 larvae 500 ug/l BDE47 treatment 2.32769 SRR941753 posterior pectoral fin normal 2.31909 SRR516133 skin male and 5 month 2.2865 SRR1647683 spleen SVCV treatment 2.27236 SRR1004787 larvae impdh1a morpholino 2.25676 SRR592701 pineal gland normal 2.22447 SRR1647684 spleen SVCV treatment 2.2215700000000003 SRR1048061 pineal gland dark 2.0941799999999997 SRR372796 bud normal 2.0051400000000004 SRR1569495 embryo normal 1.91747 SRR1562533 testis normal 1.9144400000000001 SRR1048059 pineal gland light 1.79102 SRR516135 skin male and 5 month 1.7731700000000001 SRR516132 skin male and 5 month 1.6798 SRR1005530 embryo RPL11 morpholino 1.63973 SRR1647679 head kidney normal 1.55653 SRR801556 embryo RPS19 and p53 morpholino 1.55411 SRR592699 pineal gland normal 1.54368 SRR801555 embryo RPS19 morpholino 1.52655 SRR1647680 head kidney SVCV treatment 1.51777 SRR891512 blood normal 1.40642 SRR891510 muscle normal 1.40353 SRR891495 heart normal 1.24279 SRR527835 tail normal 1.23118 SRR514028 retina control morpholino 1.1200299999999999 SRR514030 retina id2a morpholino 0.944492 SRR800045 muscle normal 0.8612639999999999 SRR372793 shield normal 0.40513299999999997 SRR800046 sphere stage 5azaCyD treatment 0.318479 SRR748488 sperm normal 0.24752600000000002 SRR748491 germ ring normal 0.157803 SRR1021215 sphere stage Mzeomesa 0.14669400000000002 SRR372791 dome normal 0.0904886 SRR800049 sphere stage control treatment 0.0657191 SRR1021213 sphere stage normal 0.0523227 SRR372789 1K cell normal 0.00297935