sample tissue condition fpkm SRR1035239 liver transgenic mCherry control 97.8119 SRR1035237 liver transgenic UHRF1 51.7237 ERR023146 head kidney normal 35.9913 SRR1562530 liver normal 33.1103 SRR1299125 caudal fin Half day time after treatment 25.3398 SRR1534351 larvae 500 ug/l BDE47 treatment 20.8159 SRR1534350 larvae 5 ug/l BDE47 treatment 17.2034 SRR1534349 larvae DMSO vehicle 16.4213 SRR1028002 head normal 16.3019 SRR1299126 caudal fin One day time after treatment 16.2831 SRR1299127 caudal fin Two days time after treatment 15.7778 SRR1299128 caudal fin Three days time after treatment 11.9093 SRR1562533 testis normal 11.359000000000002 SRR1167753 embryo bacterial infection 10.5515 SRR1167757 embryo mpeg1 morpholino and bacterial infection 10.0171 SRR372802 5 dpf normal 9.86169 SRR1028004 head normal 9.82961 SRR1708346 embryo SIBPS 8.4995 SRR942767 embryo myd88-/- and infection with Mycobacterium marinum 8.358139999999999 SRR1167752 embryo normal 8.264439999999999 SRR942772 embryo myd88+/+ and infection with Mycobacterium marinum 8.15593 SRR1167756 embryo mpeg1 morpholino 8.14815 SRR630463 5 dpf normal 8.02873 ERR023143 swim bladder normal 7.6922 SRR630464 5 dpf injected epidermidis 7.5096300000000005 SRR1299124 caudal fin Zero day time after treatment 7.2180800000000005 SRR1299129 caudal fin Seven days time after treatment 7.07862 SRR1039571 gastrointestinal diet 0.1 NPM 6.96374 SRR1342217 embryo infection with Mycobacterium marinum 6.94112 SRR1708344 embryo MUTPS 6.61112 SRR519752 7 dpf VD3 treatment 6.594180000000001 SRR776510 embryo Salmonella infected and miR-146 knockdown 6.30045 SRR1205169 5dpf transgenic sqET20 and neomycin treated 5h and GFP+ 6.29514 SRR519732 7 dpf FETOH treatment 6.1898 SRR1342219 embryo marco morpholino and infection with Mycobacterium marinum 6.1745 SRR535978 larvae normal 6.1159 SRR891504 liver normal 5.87993 SRR527840 24hpf normal 5.84403 SRR658539 bud Gata5/6 morphant 5.82301 SRR519747 6 dpf VD3 treatment 5.80435 SRR519727 6 dpf FETOH treatment 5.32723 SRR610742 3 dpf express NICD 5.23171 SRR1205163 5dpf transgenic sqET20 and neomycin treated 3h and GFP+ 5.161580000000001 SRR776509 embryo Salmonella infected 5.14381 SRR1562529 intestine and pancreas normal 5.10604 SRR1167763 embryo ptpn6 morpholino and bacterial infection 5.10554 SRR527836 24hpf normal 5.08789 SRR942769 embryo myd88+/+ 4.95109 SRR1342216 embryo norml 4.8676699999999995 SRR610741 3 dpf express Ras 4.85666 SRR1291417 5 dpi injected marinum 4.49901 SRR658533 bud normal 4.485180000000001 SRR1523211 embryo control morpholino 4.44545 SRR372796 bud normal 4.40549 SRR1188160 embryo Insulin 4 hpi 4.32595 SRR372800 2 dpf normal 4.3101199999999995 SRR658535 bud Gata5 morphant 4.235040000000001 SRR1188148 embryo Control PBS 0.5 hpi 4.17445 SRR1167762 embryo ptpn6 morpholino 4.156280000000001 SRR658537 bud Gata6 morphant 4.04133 SRR372798 28 hpf normal 3.89741 SRR1205160 5dpf transgenic sqET20 and GFP+ 3.8372699999999997 SRR527833 5 dpf normal 3.8060099999999997 SRR942764 embryo myd88-/- 3.74592 SRR1188156 embryo Control PBS 4 hpi 3.7222699999999995 SRR1523214 embryo glut12 morpholino 3.71401 SRR1342218 embryo marco morpholino 3.62259 SRR527844 24hpf normal 3.60566 SRR658545 6 somite Gata6 morphant 3.5996 SRR1291414 5 dpi normal 3.57073 SRR797914 embryo pbx2/4-MO 3.55959 ERR023145 heart normal 3.42105 SRR1562532 spleen normal 3.38805 SRR1205157 5dpf transgenic sqET20 and neomycin treated 1h and GFP+ 3.3840199999999996 SRR535986 larvae nhsl1b mut 3.2610900000000003 SRR1708345 embryo SIBAS 3.15619 SRR1104059 heart kctd10 mut 3.11705 SRR535847 larvae normal 3.02962 SRR749515 24 hpf eif3ha morphant 2.9481 SRR1188152 embryo Insulin 0.5 hpi 2.8729400000000003 SRR1648856 brain normal 2.85242 SRR797908 embryo normal 2.84978 SRR610740 3 dpf normal 2.80318 SRR658543 6 somite Gata5 morphan 2.76932 SRR519742 4 dpf VD3 treatment 2.75656 SRR658541 6 somite normal 2.74821 SRR633550 larvae exposed to hypoxia stress 2.60664 SRR1004786 larvae control morpholino 2.5424599999999997 SRR535848 larvae hoxb1b mut 2.52245 SRR1708343 embryo MUTAS 2.5219 SRR519722 4 dpf FETOH treatment 2.5198099999999997 SRR516135 skin male and 5 month 2.49167 SRR535850 larvae hoxb1b mut 2.4843900000000003 SRR535852 larvae hoxb1b mut 2.4752099999999997 SRR633516 larvae normal 2.47096 SRR1028003 head normal 2.46297 SRR658547 6 somite Gata5/6 morphant 2.46271 SRR726542 5 dpf infection with control 2.32841 SRR1562528 eye normal 2.32305 SRR535849 larvae normal 2.25851 SRR594771 endothelium normal 2.2276700000000003 SRR038624 embryo traf6 morpholino and bacterial infection 2.20992 SRR535943 larvae vangl mut 2.18859 SRR372793 shield normal 2.16882 SRR797917 embryo pbx2/4-MO and prdm1-/- 2.16715 SRR535851 larvae normal 2.14434 SRR726540 5 dpf normal 2.09368 SRR1035981 13 hpf rx3+/+ or rx3+/- 2.07308 SRR065197 3 dpf U1C knockout 2.06013 SRR1104058 heart normal 1.94927 SRR797911 embryo prdm1-/- 1.9357 SRR1004788 larvae impdh1b morpholino 1.91788 SRR038626 embryo control morpholino and bacterial infection 1.9165 SRR749514 24 hpf normal 1.8515700000000002 SRR535926 larvae normal 1.81142 SRR535890 larvae normal 1.8035900000000002 SRR1005530 embryo RPL11 morpholino 1.7863 SRR801555 embryo RPS19 morpholino 1.77623 SRR535913 larvae krox mut 1.76659 SRR776507 embryo normal 1.73432 SRR1039573 gastrointestinal diet 0.75 NPM 1.7237900000000002 SRR831692 embryo normal 1.71522 SRR1035978 13 hpf rx3-/- 1.71101 SRR633544 larvae exposed to cold stress 1.6349200000000002 SRR1004787 larvae impdh1a morpholino 1.53681 SRR038625 embryo traf6 morpholino 1.51769 SRR726541 5 dpf infection with Mycobacterium marinum 1.51643 SRR1647680 head kidney SVCV treatment 1.4327 SRR038627 embryo control morpholino 1.3666 SRR776508 embryo miR-146 knockdown 1.3514899999999999 SRR1004785 larvae normal 1.32324 SRR516133 skin male and 5 month 1.26871 SRR1648854 brain normal 1.25601 SRR516128 skin male and 5 month 1.24328 SRR1205166 5dpf transgenic sqET20 and neomycin treated 3h 1.07475 SRR700534 heart control morpholino 1.04728 SRR594769 blood normal 1.0417100000000001 ERR023144 brain normal 1.02569 SRR519717 2 dpf FETOH treatment 1.01604 SRR527832 16-36 hpf normal 1.01088 SRR519737 2 dpf VD3 treatment 1.0095 SRR1205151 5dpf transgenic sqET20 and neomycin treated 1h 0.9936709999999999 SRR516125 skin male and 3.5 year 0.985102 SRR801556 embryo RPS19 and p53 morpholino 0.970585 SRR516121 skin male and 3.5 year 0.965362 SRR800046 sphere stage 5azaCyD treatment 0.9556479999999999 SRR516131 skin male and 5 month 0.9529989999999999 SRR1205172 5dpf transgenic sqET20 and neomycin treated 5h 0.9408270000000001 SRR516124 skin male and 3.5 year 0.9389299999999999 SRR527834 head normal 0.914747 SRR1205154 5dpf transgenic sqET20 0.887293 SRR941749 anterior pectoral fin normal 0.883825 SRR1035984 13 hpf normal 0.870809 SRR700537 heart Gata4 morpholino 0.813079 SRR1004789 larvae impdh2 morpholino 0.805146 SRR1647682 spleen normal 0.7199479999999999 SRR1569495 embryo normal 0.704687 SRR516129 skin male and 5 month 0.676126 SRR516126 skin male and 5 month 0.67608 SRR1569491 embryo normal 0.664361 SRR1565817 brain normal 0.620274 SRR516123 skin male and 3.5 year 0.610113 SRR1565813 brain normal 0.5700189999999999 SRR1565819 brain normal 0.562316 SRR065196 3 dpf normal 0.5616300000000001 SRR527835 tail normal 0.544633 SRR516127 skin male and 5 month 0.506444 SRR1647681 head kidney SVCV treatment 0.47597399999999995 SRR1049946 embryo transgenic TgOMP-Gal4 and UAS-GCaMP1.6 and treated with DMSO 0.47458999999999996 SRR941753 posterior pectoral fin normal 0.462898 SRR1647683 spleen SVCV treatment 0.435866 SRR1049952 embryo transgenic TgOMP-Gal4 and UAS-GCaMP1.6 and treated with gallein 0.415216 SRR1565815 brain normal 0.414662 SRR1648855 brain normal 0.413588 SRR516134 skin male and 5 month 0.412624 SRR1647679 head kidney normal 0.396914 SRR1005529 embryo control morpholino 0.393623 SRR801554 embryo control morpholino 0.393031 SRR1565807 brain normal 0.384384 SRR1565811 brain normal 0.37950500000000004 SRR1565809 brain normal 0.37137800000000004 ERR145635 skeletal muscle 27 degree_C to 16 degree_C 0.370847 SRR891512 blood normal 0.358956 SRR748491 germ ring normal 0.355457 SRR748488 sperm normal 0.336467 SRR516122 skin male and 3.5 year 0.32055500000000003 SRR1562531 muscle normal 0.303564 SRR372791 dome normal 0.301154 ERR594416 retina transgenic flk1 0.298871 SRR592699 pineal gland normal 0.29529099999999997 SRR1565805 brain normal 0.289047 SRR891510 muscle normal 0.281225 SRR592700 pineal gland normal 0.254523 SRR592701 pineal gland normal 0.232641 SRR891511 brain normal 0.215115 SRR592702 pineal gland normal 0.21491799999999997 SRR592698 pineal gland normal 0.211403 SRR592703 pineal gland normal 0.188845 ERR594418 retina transgenic flk1 and develop tumors 0.163502 ERR145631 skeletal muscle 32 degree_C to 16 degree_C 0.15784600000000001 SRR1647684 spleen SVCV treatment 0.151148 SRR516132 skin male and 5 month 0.124276 SRR514028 retina control morpholino 0.1227 SRR800049 sphere stage control treatment 0.116146 SRR1048059 pineal gland light 0.11604500000000001 SRR516130 skin male and 5 month 0.11008699999999999 SRR1021215 sphere stage Mzeomesa 0.100212 ERR594417 retina normal 0.0999215 ERR145648 skeletal muscle 27 degree_C to 27 degree_C 0.0908212 SRR514030 retina id2a morpholino 0.0893819 SRR1021213 sphere stage normal 0.0789658 SRR957180 heart 7 days after heart tip amputation 0.0785245 SRR1048061 pineal gland dark 0.050235699999999994 SRR372787 2-4 cell normal 0.0335264 SRR1621206 embryo normal 0.013321600000000001 SRR1049814 256 cell normal 0.00958387